Porin

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E. coli Ompc (PDB code [[2j1n]])

Contents

3D structures of Porin

Updated on 20-August-2014

Porin

2xe5, 2xe1, 2xe2, 2xe3, 2j1n – EcOmpC – Escherichia coli
3k19, 3k1b, 2zfg, 1omf, 2omf, 1opf, 3poq, 3pou, 3pox, 4jfb, 4lse, 4lsf, 4lsh, 4lsi – EcOmpF
3nb3 – EcOmpA + EcOmpC - EM
3upg, 3uu2 – OmpC – Salmonella enterica
1hxt, 1hxu, 1hxx, 1bt9, 1gfm, 1gfn, 1gfo, 1gfp, 1gfq, 1mpf – EcOmpF (mutant)
2iwv, 2iww, 2f1c - EcOmpG
2x9k - EcOmpG (mutant)
2wjq, 2wjr – EcOmp NANC
1pho - EcOmp
3a2r – NmOmpB – Neisseria meningitides
3sy9 – PaOpdC – Pseudomonas aeruginosa
2odj, 3sy7, 4foz – PaOprD
3szd - PaOpdF
3t20 – PaOpdH
2qtk, 2y2x, 3sys – PaOpdK
3t0s - PaOpdL
2y0k, 2y0l, 3szv – PaOpdO
3syb – PaOpdP
3t24 - PaOpdQ
3jty – Omp – Pseudomonas fluorescens
2v9u – MsOmp rim domain – Mycobacteria smegmatis
1uun – MsOmp (mutant)
2fgr - DaOmp32 - Delftia acidovorans
1a0s, 1mpr - StOmp - Salmonella typhimurium
3nsg - StOmpF
2prn, 1bh3, 3prn, 5prn, 6prn, 7prn, 8prn – RbOmp (mutant) - Rhodopseudomonas blastica
1prn - RbOmp
1osm – OmpK36 – Klebsiella pneumoniae
2por, 3por – Omp – Rhodobacter capsulatus
4aui – Omp – Neisseria gonorrheae
4gey, 4gf4 – Omp B – Pseudomonas putida

Porin + polypeptides

2j4u - EcOmpC + lactotransferrin fragment
2zld - EcOmpF + colicin E3
3o0e - EcOmpF + colicin peptide
1h6s - RbOmp + inserted sequence

Porin + various compounds

3hw9, 3hwb - EcOmpF + ions
3fyx - Ec~OmpF + dibenzo-18-crown-6
4gcp, 4gcq, 4gcs – EcOmpF + antibiotic
1af6, 1mpq, 1mpm, 1mpn, 1mpo - EcOmp LAMB + sugars
3a2s, 3a2t - NmOmpB + sugars
3a2u - NmOmpB + AMPPNP
2o4v - PaOprP + phosphate
2fgq - DaOmp32 + malate
1e54 - Omp32 + sulfate - Comamonas acidovorans
1oh2, 1a0t - StOmp + sucrose

Voltage-Dependent Anion Channel

See Ion channels

References

  1. Basle A, Rummel G, Storici P, Rosenbusch JP, Schirmer T. Crystal structure of osmoporin OmpC from E. coli at 2.0 A. J Mol Biol. 2006 Oct 6;362(5):933-42. Epub 2006 Aug 3. PMID:16949612 doi:10.1016/j.jmb.2006.08.002
  2. Besya AB, Mobasheri H, Ejtehadi MR. Gating and conduction of nano-channel forming proteins: a computational approach. J Biomol Struct Dyn. 2012 Aug 28. PMID:22928968 doi:10.1080/07391102.2012.712460

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Michal Harel, Alexander Berchansky, Jaime Prilusky

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