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4f0m

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4f0m, resolution 2.25Å ()
Ligands: , ,
Non-Standard Residues:
Activity: Ribulose-bisphosphate carboxylase, with EC number 4.1.1.39
Related: 4f0h, 4f0k


Resources: FirstGlance, OCA, RCSB, PDBsum
Coordinates: save as pdb, mmCIF, xml



UNACTIVATED RUBISCO with MAGNESIUM AND A WATER MOLECULE BOUND

Publication Abstract from PubMed

Ribulose 1,5-bisphosphate carboxylase/oxygenase (RuBisCO) is a crucial enzyme in carbon fixation and the most abundant protein on earth. It has been studied extensively by biochemical and structural methods; however, the most essential activation step has not yet been described. Here, we describe the mechanistic details of Lys carbamylation that leads to RuBisCO activation by atmospheric CO(2). We report two crystal structures of nitrosylated RuBisCO from the red algae Galdieria sulphuraria with O(2) and CO(2) bound at the active site. G. sulphuraria RuBisCO is inhibited by cysteine nitrosylation that results in trapping of these gaseous ligands. The structure with CO(2) defines an elusive, preactivation complex that contains a metal cation Mg(2+) surrounded by three H(2)O/OH molecules. Both structures suggest the mechanism for discriminating gaseous ligands by their quadrupole electric moments. We describe conformational changes that allow for intermittent binding of the metal ion required for activation. On the basis of these structures we propose the individual steps of the activation mechanism. Knowledge of all these elements is indispensable for engineering RuBisCO into a more efficient enzyme for crop enhancement or as a remedy to global warming.

Structural mechanism of RuBisCO activation by carbamylation of the active site lysine., Stec B, Proc Natl Acad Sci U S A. 2012 Oct 29. PMID:23112176

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

About this Structure

4f0m is a 2 chain structure with sequence from Galdieria sulphuraria. Full crystallographic information is available from OCA.

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