Structural highlights
2x2q is a 4 chain structure with sequence from Synthetic construct. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
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| Method: | X-ray diffraction, Resolution 1.9Å |
| Ligands: | , , , , , , |
| Resources: | FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT |
Publication Abstract from PubMed
'Locked nucleic acids' (LNAs) are known to introduce enhanced bio- and thermostability into natural nucleic acids rendering them powerful tools for diagnostic and therapeutic applications. We present the 1.9 A X-ray structure of an 'all LNA' duplex containing exclusively modified beta-D-2'-O-4'C-methylene ribofuranose nucleotides. The helix illustrates a new type of nucleic acid geometry that contributes to the understanding of the enhanced thermostability of LNA duplexes. A notable decrease of several local and overall helical parameters like twist, roll and propeller twist influence the structure of the LNA helix and result in a widening of the major groove, a decrease in helical winding and an enlarged helical pitch. A detailed structural comparison to the previously solved RNA crystal structure with the corresponding base pair sequence underlines the differences in conformation. The surrounding water network of the RNA and the LNA helix shows a similar hydration pattern.
The crystal structure of an 'All Locked' nucleic acid duplex.,Eichert A, Behling K, Betzel C, Erdmann VA, Furste JP, Forster C Nucleic Acids Res. 2010 Oct 1;38(19):6729-36. Epub 2010 Jun 8. PMID:20530536[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Eichert A, Behling K, Betzel C, Erdmann VA, Furste JP, Forster C. The crystal structure of an 'All Locked' nucleic acid duplex. Nucleic Acids Res. 2010 Oct 1;38(19):6729-36. Epub 2010 Jun 8. PMID:20530536 doi:10.1093/nar/gkq505
