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1h7k

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1h7k, resolution 2.40Å ()
Ligands: , ,
Non-Standard Residues:
Activity: Catalase, with EC number 1.11.1.6
Related: 1e93, 1h6n, 1m85, 1mqf, 1nm0, 2cag, 2cah
Resources: FirstGlance, OCA, PDBsum, RCSB
Coordinates: save as pdb, mmCIF, xml



Contents

FORMATION OF A TYROSYL RADICAL INTERMEDIATE IN PROTEUS MIRABILIS CATALASE BY DIRECTED MUTAGENESIS AND CONSEQUENCES FOR NUCLEOTIDE REACTIVITY

Publication Abstract from PubMed

Proteus mirabilis catalase (PMC) belongs to the family of NADPH binding catalases. The function of NADPH in these enzymes is still a matter of debate. This study presents the effects of two independent phenylalanine mutations (F194 and F215), located between NADPH and heme in the PMC structure. The phenylalanines were replaced with tyrosines which we predicted could carry radicals in a NADPH-heme electron transfer. The X-ray crystal structures of the two mutants indicated that neither the binding site of NADPH nor the immediate environment of the residues was affected by the mutations. Measurements using H2O2 as a substrate confirmed that the variants were as active as the native enzyme. With equivalent amounts of peroxoacetic acid, wild-type PMC, F215Y PMC, and beef liver catalase (BLC) formed a stable compound I, while the F194Y PMC variant produced a compound I which was rapidly transformed into compound II and a tyrosyl radical. EPR studies showed that this radical, generated by the oxidation of Y194, was not related to the previously observed radical in BLC, located on Y369. In the presence of excess NADPH, compound I was reduced to a resting enzyme (k(obs) = 1.7 min(-1)) in a two-electron process. This was independent of the enzyme's origin and did not require any thus far identified tyrosyl radicals. Conversely, the presence of a tyrosyl radical in F194Y PMC greatly enhanced the oxidation of reduced beta-nicotinamide mononucleotide under a steady-state H2O2 flow with observable compound II. This process could involve a one-electron reduction of compound I via Y194.

Formation of a tyrosyl radical intermediate in Proteus mirabilis catalase by directed mutagenesis and consequences for nucleotide reactivity., Andreoletti P, Gambarelli S, Sainz G, Stojanoff V, White C, Desfonds G, Gagnon J, Gaillard J, Jouve HM, Biochemistry. 2001 Nov 13;40(45):13734-43. PMID:11695923

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

About this Structure

1h7k is a 1 chain structure with sequence from Proteus mirabilis. Full crystallographic information is available from OCA.

See Also

Reference

  • Andreoletti P, Gambarelli S, Sainz G, Stojanoff V, White C, Desfonds G, Gagnon J, Gaillard J, Jouve HM. Formation of a tyrosyl radical intermediate in Proteus mirabilis catalase by directed mutagenesis and consequences for nucleotide reactivity. Biochemistry. 2001 Nov 13;40(45):13734-43. PMID:11695923
  • Gouet P, Jouve HM, Dideberg O. Crystal structure of Proteus mirabilis PR catalase with and without bound NADPH. J Mol Biol. 1995 Jun 23;249(5):933-54. PMID:7791219 doi:http://dx.doi.org/10.1006/jmbi.1995.0350

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