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3pds
From Proteopedia
| 3pds, resolution 3.50Å () | |||||
|---|---|---|---|---|---|
| Ligands: | , , | ||||
| Gene: | ADRB2, ADRB2R, B2AR (Homo sapiens) | ||||
| Activity: | Lysozyme, with EC number 3.2.1.17 | ||||
| Related: | 2rh1 | ||||
| |||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB | ||||
| Coordinates: | save as pdb, mmCIF, xml | ||||
Irreversible Agonist-Beta2 Adrenoceptor Complex
G-protein-coupled receptors (GPCRs) are eukaryotic integral membrane proteins that modulate biological function by initiating cellular signalling in response to chemically diverse agonists. Despite recent progress in the structural biology of GPCRs, the molecular basis for agonist binding and allosteric modulation of these proteins is poorly understood. Structural knowledge of agonist-bound states is essential for deciphering the mechanism of receptor activation, and for structure-guided design and optimization of ligands. However, the crystallization of agonist-bound GPCRs has been hampered by modest affinities and rapid off-rates of available agonists. Using the inactive structure of the human beta(2) adrenergic receptor (beta(2)AR) as a guide, we designed a beta(2)AR agonist that can be covalently tethered to a specific site on the receptor through a disulphide bond. The covalent beta(2)AR-agonist complex forms efficiently, and is capable of activating a heterotrimeric G protein. We crystallized a covalent agonist-bound beta(2)AR-T4L fusion protein in lipid bilayers through the use of the lipidic mesophase method, and determined its structure at 3.5 A resolution. A comparison to the inactive structure and an antibody-stabilized active structure (companion paper) shows how binding events at both the extracellular and intracellular surfaces are required to stabilize an active conformation of the receptor. The structures are in agreement with long-timescale (up to 30 mus) molecular dynamics simulations showing that an agonist-bound active conformation spontaneously relaxes to an inactive-like conformation in the absence of a G protein or stabilizing antibody.
Structure and function of an irreversible agonist-beta(2) adrenoceptor complex., Rosenbaum DM, Zhang C, Lyons JA, Holl R, Aragao D, Arlow DH, Rasmussen SG, Choi HJ, Devree BT, Sunahara RK, Chae PS, Gellman SH, Dror RO, Shaw DE, Weis WI, Caffrey M, Gmeiner P, Kobilka BK, Nature. 2011 Jan 13;469(7329):236-40. PMID:21228876
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
About this Structure
3pds is a 1 chain structure with sequence from Homo sapiens,enterobacteria phage t4,homo sapiens. Full crystallographic information is available from OCA.
Reference
- Rosenbaum DM, Zhang C, Lyons JA, Holl R, Aragao D, Arlow DH, Rasmussen SG, Choi HJ, Devree BT, Sunahara RK, Chae PS, Gellman SH, Dror RO, Shaw DE, Weis WI, Caffrey M, Gmeiner P, Kobilka BK. Structure and function of an irreversible agonist-beta(2) adrenoceptor complex. Nature. 2011 Jan 13;469(7329):236-40. PMID:21228876 doi:10.1038/nature09665
Categories: Homo sapiens,enterobacteria phage t4,homo sapiens | Lysozyme | Aragao, D. | Arlow, D H. | Caffrey, M. | Chae, P S. | Choi, H J. | DeVree, B T. | Dror, R O. | Gellman, S H. | Gmeiner, P. | Holl, R. | Kobilka, B K. | Lyons, J A. | Rasmussen, S G.F. | Rosenbaum, D M. | Shaw, D E. | Sunahara, R K. | Weis, W I. | Zhang, C.
