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User:Eric Martz
From Proteopedia
Contents |
Eric Martz
Professor Emeritus, University of Massachusetts, Amherst MA USA
emartz at microbio dot umass dot edu
martz.molviz.org
Some Proteopedia Pages to Which I've Contributed
Molecules: Topic Pages
- Major Histocompatibility Complex Class I
- Proton Channels, which includes an animated morph.
- Recoverin, a calcium-activated myristoyl switch
- User:Eric Martz/Nucleosomes (a protected page for lectures), which was copied into Nucleosomes so others can improve it.
Molecules: PDB Code-Titled Pages
- 2ic8 (green links in overview)
- 2rd0 Phosphatidylinositol kinase oncogene: I authored scenes similar to many of the figures from the publication.
Topic Pages: Lists of Other Pages
- About Macromolecular Structure
- Research Groups and Institutes
- Student Projects
- Teaching Scenes, Tutorials, and Educators' Pages
- See also Proteopedia: Topic Pages
Topic Pages - Structural Bioinformatics
- About Macromolecular Structure
- Amino Acids
- Asymmetric Unit UNIT CELL SCENE NOT WORKING
- Atomic coordinate file <- PDB file, PDB file format
- Biological Unit <- Quaternary structure
- Conservation, Evolutionary
- DRuMS
- Eric Martz's Favorites
- Free R
- Highest impact structures of all time.
- History of Macromolecular Visualization
- Ligand
- Morphs NEEDS WORK
- NMR Ensembles of Models
- PDB identification code
- Personal favorites
- Protein Data Bank
- Quality assessment for molecular models
- R value
- Resolution
- Sites, Functional
- Standard Residues and Non-Standard Residues
- Teaching Strategies Using Proteopedia
- Temperature value <- B value, Disorder
Meta Pages
- Help:Copying FirstGlance Scenes into Proteopedia
- Help:Editing
- Help:Protected Pages
- Mugs and T-Shirts (I created these products and set up the non-profit store at cafepress.com/molviz4.)
- Proteopedia:About
- Proteopedia:Namespaces
- Proteopedia:News
- Proteopedia:Policy
- Proteopedia:Problems
- Proteopedia:Topic Pages
- Proteopedia:Wishlist
Templates
- Template:ColorKey_N2CRainbow
- Example of use: NMR_Ensembles_of_Models#Display_of_NMR_Models_by_Proteopedia
- Template:Protected page banner
- Example of use: User:Karl Oberholser/Ramachandran Plots
- The Templates used on the DRuMS page. All begin "Template:ColorKey".
Workshops
- One-day courses in molecular visualization and structural bioinformatics for researchers and educators.
Principal Author or Architect of (Elsewhere):
- FirstGlance in Jmol, a general-purpose molecular visualization tool which has been adopted by Nature (see the 3D View links), the ConSurf Server, and other journals and structural bioinformatics servers. Available 2005-present.
- Visualization for the the ConSurf Server developed by Nir Ben-Tal, Fabian Glaser, Elana Erez and others, which colors amino acids by evolutionary conservation, completely automatically. Available 2002-present.
- Top Five 3D Molecular Visualization Technologies for the Rest Of Us. Page available 2007-present.
- MolviZ.Org with tutorials in Jmol and molecular visualization resources for educators and students. Included is a DNA Structure Tutorial started in 1996, and now (in collaboration with Angel Herráez) available in 5 languages.
- World Index of Molecular Visualization Resources. Available 2000-present.
- Atlas of Macromolecules. Available 2002-present.
- With Jaime Prilusky, the PDB Lite search interface for students and beginners to find published macromolecular models. Available 1998-present.
- An incomplete History of Macromolecular Visualization which includes a list of the earliest macromolecules solved by X-ray crystallography. Available 1997-present.
- molvis-list, founded in 1995 as the RasMol List. Maintained largely by Tim Driscoll/molvisions.com since 2004.
And in an earlier era
- Protein Explorer 1998-present.
- The RasMol Home Page founded 1996. See also RasMol.Org by Herbert Bernstein, available since 1999.
Personal Quicklinks
All Protected Pages
Protected Sandbox Pages
- User:Eric Martz/Sandbox scrolling division test
- User:Eric Martz/Sandbox 2 FGiJ state script -> Proteopedia
- User:Eric Martz/Sandbox 3 ConSurf mockup
- User:Eric Martz/liveConnect Test hyperlink to javascript applet.script(...): HTML not interpreted
