6k5e

From Proteopedia

Crystal structure of BioH from Klebsiella pneumonia

PDB ID 6k5e

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Structural highlights

6k5e is a 6 chain structure with sequence from "bacillus_pneumoniae"_(schroeter_1886)_flugge_1886 "bacillus pneumoniae" (schroeter 1886) flugge 1886. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Gene:	bioH ("Bacillus pneumoniae" (Schroeter 1886) Flugge 1886)
Activity:	[acyl-carrier_protein_methyl_ester_esterase Pimelyl-[acyl-carrier protein] methyl ester esterase], with EC number 3.1.1.85
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

[A0A0S4G6Z4_KLEPN] The physiological role of BioH is to remove the methyl group introduced by BioC when the pimeloyl moiety is complete. It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway through the hydrolysis of the ester bonds of pimeloyl-ACP esters.[HAMAP-Rule:MF_01260][SAAS:SAAS00186858]

Publication Abstract from PubMed

The BioH carboxylesterase which is a typical alpha/beta-hydrolase enzyme involved in biotin synthetic pathway in most bacteria. BioH acts as a gatekeeper and blocks the further elongation of its substrate. In the pathogen Klebsiella pneumoniae, BioH plays a critical role in the biosynthesis of biotin. To better understand the molecular function of BioH, we determined the crystal structure of BioH from K. pneumoniae at 2.26A resolution using X-ray crystallography. The structure of KpBioH consists of an alpha-beta-alpha sandwich domain and a cap domain. B-factor analysis revealed that the alpha-beta-alpha sandwich domain is a rigid structure, while the loops in the cap domain shows the structural flexibility. The active site of KpBioH contains the catalytic triad (Ser82-Asp207-His235) on the interface of the alpha-beta-alpha sandwich domain, which is surrounded by the cap domain. Size exclusion chromatography shows that KpBioH prefers the monomeric state in solution, whereas two-fold symmetric dimeric formation of KpBioH was observed in the asymmetric unit, the conserved Cys31-based disulfide bonds can maintain the irreversible dimeric formation of KpBioH. Our study provides important structural insight for understanding the molecular mechanisms of KpBioH and its homologous proteins.

Structural insight into the carboxylesterase BioH from Klebsiella pneumoniae.,Wang L, Chen Y, Shang F, Liu W, Lan J, Gao P, Ha NC, Nam KH, Dong Y, Quan C, Xu Y Biochem Biophys Res Commun. 2019 Dec 10;520(3):538-543. doi:, 10.1016/j.bbrc.2019.10.050. Epub 2019 Oct 12. PMID:31615653^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Wang L, Chen Y, Shang F, Liu W, Lan J, Gao P, Ha NC, Nam KH, Dong Y, Quan C, Xu Y. Structural insight into the carboxylesterase BioH from Klebsiella pneumoniae. Biochem Biophys Res Commun. 2019 Dec 10;520(3):538-543. doi:, 10.1016/j.bbrc.2019.10.050. Epub 2019 Oct 12. PMID:31615653 doi:http://dx.doi.org/10.1016/j.bbrc.2019.10.050