4bem

From Proteopedia

Crystal structure of the F-type ATP synthase c-ring from Acetobacterium woodii.

PDB ID 4bem

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Structural highlights

4bem is a 10 chain structure with sequence from Acetobacterium woodii DSM 1030. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	X-ray diffraction, Resolution 2.1Å
Ligands:	, , , , , ,
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

H6LFT2_ACEWD F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.[HAMAP-Rule:MF_01396] Key component of the F(0) channel; it plays a direct role in translocation across the membrane. A homomeric c-ring of between 10-14 subunits forms the central stalk rotor element with the F(1) delta and epsilon subunits.[HAMAP-Rule:MF_01396]

Publication Abstract from PubMed

All rotary ATPases catalyse the interconversion of ATP and ADP-Pi through a mechanism that is coupled to the transmembrane flow of H(+) or Na(+). Physiologically, however, F/A-type enzymes specialize in ATP synthesis driven by downhill ion diffusion, while eukaryotic V-type ATPases function as ion pumps. To begin to rationalize the molecular basis for this functional differentiation, we solved the crystal structure of the Na(+)-driven membrane rotor of the Acetobacterium woodii ATP synthase, at 2.1 A resolution. Unlike known structures, this rotor ring is a 9:1 heteromer of F- and V-type c-subunits and therefore features a hybrid configuration of ion-binding sites along its circumference. Molecular and kinetic simulations are used to dissect the mechanisms of Na(+) recognition and rotation of this c-ring, and to explain the functional implications of the V-type c-subunit. These structural and mechanistic insights indicate an evolutionary path between synthases and pumps involving adaptations in the rotor ring.

High-resolution structure and mechanism of an F/V-hybrid rotor ring in a Na(+)-coupled ATP synthase.,Matthies D, Zhou W, Klyszejko AL, Anselmi C, Yildiz O, Brandt K, Muller V, Faraldo-Gomez JD, Meier T Nat Commun. 2014 Nov 10;5:5286. doi: 10.1038/ncomms6286. PMID:25381992^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Matthies D, Zhou W, Klyszejko AL, Anselmi C, Yildiz O, Brandt K, Muller V, Faraldo-Gomez JD, Meier T. High-resolution structure and mechanism of an F/V-hybrid rotor ring in a Na(+)-coupled ATP synthase. Nat Commun. 2014 Nov 10;5:5286. doi: 10.1038/ncomms6286. PMID:25381992 doi:http://dx.doi.org/10.1038/ncomms6286