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3bsh

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3bsh, resolution 3.00Å ()
Ligands: ,
Activity: Alpha-amylase, with EC number 3.2.1.1
Related: 1ht6, 3bsg
Resources: FirstGlance, OCA, PDBsum, RCSB
Coordinates: save as pdb, mmCIF, xml



Contents

Barley alpha-amylase isozyme 1 (AMY1) double mutant Y105A/Y380A in complex with inhibitor acarbose

Publication Abstract from PubMed

Certain starch hydrolases possess secondary carbohydrate binding sites outside of the active site, suggesting that multi-site substrate interactions are functionally significant. In barley alpha-amylase both Tyr380, situated on a remote non-catalytic domain, and Tyr105 in subsite -6 of the active site cleft are principal carbohydrate binding residues. The dual active site/secondary site mutants Y105A/Y380A and Y105A/Y380M show that each of Tyr380 and Tyr105 is important, albeit not essential for binding, degradation, and multiple attack on polysaccharides, while Tyr105 predominates in oligosaccharide hydrolysis. Additional delicate structure/function relationships of the secondary site are uncovered using Y380A/H395A, Y380A, and H395A AMY1 mutants.

Multi-site substrate binding and interplay in barley alpha-amylase 1., Nielsen MM, Seo ES, Bozonnet S, Aghajari N, Robert X, Haser R, Svensson B, FEBS Lett. 2008 Jul 23;582(17):2567-71. Epub 2008 Jun 25. PMID:18588886

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

About this Structure

3bsh is a 1 chain structure with sequence from Hordeum vulgare. Full crystallographic information is available from OCA.

See Also

Reference

  • Nielsen MM, Seo ES, Bozonnet S, Aghajari N, Robert X, Haser R, Svensson B. Multi-site substrate binding and interplay in barley alpha-amylase 1. FEBS Lett. 2008 Jul 23;582(17):2567-71. Epub 2008 Jun 25. PMID:18588886 doi:10.1016/j.febslet.2008.06.027

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