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3b7e

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3b7e, resolution 1.45Å ()
Ligands: , , , ,
Gene: Neuraminidase (Influenza A virus)
Activity: Exo-alpha-sialidase, with EC number 3.2.1.18
Related: 3beq


Resources: FirstGlance, OCA, RCSB, PDBsum
Coordinates: save as pdb, mmCIF, xml


Contents

Neuraminidase of A/Brevig Mission/1/1918 H1N1 strain in complex with zanamivir

Publication Abstract from PubMed

Influenza virus neuraminidase (NA) plays a crucial role in facilitating the spread of newly synthesized virus in the host and is an important target for controlling disease progression. The NA crystal structure from the 1918 "Spanish flu" (A/Brevig Mission/1/18 H1N1) and that of its complex with zanamivir (Relenza) at 1.65-A and 1.45-A resolutions, respectively, corroborated the successful expression of correctly folded NA tetramers in a baculovirus expression system. An additional cavity adjacent to the substrate-binding site is observed in N1, compared to N2 and N9 NAs, including H5N1. This cavity arises from an open conformation of the 150 loop (Gly147 to Asp151) and appears to be conserved among group 1 NAs (N1, N4, N5, and N8). It closes upon zanamivir binding. Three calcium sites were identified, including a novel site that may be conserved in N1 and N4. Thus, these high-resolution structures, combined with our recombinant expression system, provide new opportunities to augment the limited arsenal of therapeutics against influenza.

Structural characterization of the 1918 influenza virus H1N1 neuraminidase., Xu X, Zhu X, Dwek RA, Stevens J, Wilson IA, J Virol. 2008 Nov;82(21):10493-501. Epub 2008 Aug 20. PMID:18715929

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

About this Structure

3b7e is a 2 chain structure with sequence from Influenza a virus. The May 2009 RCSB PDB Molecule of the Month feature on Influenza Neuraminidase by David Goodsell is 10.2210/rcsb_pdb/mom_2009_5. Full crystallographic information is available from OCA.

See Also

Reference

  • Xu X, Zhu X, Dwek RA, Stevens J, Wilson IA. Structural characterization of the 1918 influenza virus H1N1 neuraminidase. J Virol. 2008 Nov;82(21):10493-501. Epub 2008 Aug 20. PMID:18715929 doi:10.1128/JVI.00959-08

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