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2qoy

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2qoy, resolution 3.50Å ()

Ligands:

, ,

Related:

2qoz, 2qp0, 2qp1

Structural annotation:

Resources:

CATH : 2Qoyc01, 2Qoyc02, 2Qoyd01, 2Qoyd02, 2Qoye01, 2Qoye02, 2Qoyg00, 2Qoyh02, 2Qoyh01, 2Qoyi00, 2Qoyj00, 2Qoyk00, 2Qoyo00, 2Qoys00
InterPro : Ipr018130, Ipr005706, Ipr001865, Ipr020589, Ipr004087, Ipr004044, Ipr001351, Ipr005704, Ipr018280, Ipr015946, Ipr009019, Ipr008282, Ipr002942, Ipr001912, Ipr005709, Ipr018079, Ipr013810, Ipr014720, Ipr014721, Ipr018192, Ipr020568, Ipr000851, Ipr005324, Ipr005712, Ipr014717, Ipr020814, Ipr020815, Ipr000529, Ipr020606, Ipr005717, Ipr000235, Ipr000630, Ipr020574, Ipr000754, Ipr005731, Ipr018268, Ipr001848, Ipr001971, Ipr019981, Ipr018102, Ipr016027, Ipr012340, Ipr006032, Ipr005679, Ipr001892, Ipr010979, Ipr018269, Ipr019980, Ipr001209, Ipr018271, Ipr009068, Ipr005290, Ipr000589, Ipr020592, Ipr000307, Ipr000266, Ipr019979, Ipr019984, Ipr001648, Ipr018275, Ipr005732, Ipr002222, Ipr002583, Ipr001911, Ipr018278
Pfam : PF00318, PF00189, PF07650, PF00417, PF00163, PF01479, PF00333, PF03719, PF01250, PF00177, PF00410, PF00380, PF00338, PF00411, PF00164, PF00416, PF00253, PF00312, PF00886, PF00366, PF01084, PF00203, PF01649, PF01165
SCOP : d2qoyb1, d2qoyc1, d2qoyc2, d2qoyd1, d2qoye2, d2qoye1, d2qoyf1, d2qoyg1, d2qoyh1, d2qoyi1, d2qoyj1, d2qoyk1, d2qoyl1, d2qoym1, d2qoyn1, d2qoyp1, d2qoyq1, d2qoyr1, d2qoys1, d2qoyt1, d2qoyu1
UniProt : P0A7V0, Q57J38, P0A7V8, P0A7W1, P0A4D2, P02359, Q1R622, P0A7X3, P0A7R5, P0A7R9, P0A7S3, P0A7S9, P0AG59, A8A4Y1, P0A7T3, P0AG63, P0A7U1, P0A7U3, P0A7U7, Q6D9D4

Evolutionary conservation:

Toggle Conservation Colors:

Rows = identical sequences:

Further Information:

Caveats,

Explanation,
Complete Results at ConSurfDB

Resources:

FirstGlance, OCA, PDBsum, RCSB

Coordinates:

save as pdb, mmCIF, xml

1 Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin. This file contains the 30S subunit of the first 70S ribosome, with spectinomycin and neomycin bound. The entire crystal structure contains two 70S ribosomes.
2 About this Structure
3 See Also
4 Reference

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin. This file contains the 30S subunit of the first 70S ribosome, with spectinomycin and neomycin bound. The entire crystal structure contains two 70S ribosomes.

Publication Abstract from PubMed

The widely used antibiotic spectinomycin inhibits bacterial protein synthesis by blocking translocation of messenger RNA and transfer RNAs on the ribosome. Here, we show that in crystals of the Escherichia coli 70S ribosome spectinomycin binding traps a distinct swiveling state of the head domain of the small ribosomal subunit. Spectinomycin also alters the rate and completeness of reverse translocation in vitro. These structural and biochemical data indicate that in solution spectinomycin sterically blocks swiveling of the head domain of the small ribosomal subunit and thereby disrupts the translocation cycle.

A steric block in translation caused by the antibiotic spectinomycin., Borovinskaya MA, Shoji S, Holton JM, Fredrick K, Cate JH, ACS Chem Biol. 2007 Aug 17;2(8):545-52. Epub 2007 Aug 10. PMID:17696316

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

About this Structure

2qoy is a 21 chain structure with sequence from Escherichia coli. Full crystallographic information is available from OCA.

Reference

Borovinskaya MA, Shoji S, Holton JM, Fredrick K, Cate JH. A steric block in translation caused by the antibiotic spectinomycin. ACS Chem Biol. 2007 Aug 17;2(8):545-52. Epub 2007 Aug 10. PMID:17696316 doi:10.1021/cb700100n

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2qoy

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Contents

Crystal structure of the bacterial ribosome from Escherichia coli in complex with spectinomycin and neomycin. This file contains the 30S subunit of the first 70S ribosome, with spectinomycin and neomycin bound. The entire crystal structure contains two 70S ribosomes.

About this Structure

See Also

Reference

Proteopedia Page Contributors and Editors (what is this?)

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