2j79

From Proteopedia

Jump to: navigation, search


2j79, resolution 1.94Å ()
Ligands: , ,
Activity: Beta-glucosidase, with EC number 3.2.1.21
Related: 1od0, 1oif, 1oin, 1uz1, 1w3j, 2cbu, 2cbv, 2ces, 2cet, 2j75, 2j77, 2j78, 2j7a, 2j7b, 2j7c, 2j7d, 2j7e, 2j7f, 2j7g, 2j7h
Resources: FirstGlance, OCA, PDBsum, RCSB
Coordinates: save as pdb, mmCIF, xml



Contents

BETA-GLUCOSIDASE FROM THERMOTOGA MARITIMA IN COMPLEX WITH GALACTO-HYDROXIMOLACTAM

Publication Abstract from PubMed

The inhibition of glycoside hydrolases, through transition-state mimicry, is important both as a probe of enzyme mechanism and in the continuing quest for new drugs, notably in the treatment of cancer, HIV, influenza, and diabetes. The high affinity with which these enzymes are known to bind the transition state provides a framework upon which to design potent inhibitors. Recent work [for example, Bulow, A. et al. J. Am. Chem. Soc. 2000, 122, 8567-8568; Zechel, D. L. et al. J. Am. Chem. Soc. 2003, 125, 14313-14323] has revealed quite confusing and counter-intuitive patterns of inhibition for a number of glycosidase inhibitors. Here we describe a synergistic approach for analysis of inhibitors with a single enzyme 'model system', the Thermotoga maritima family 1 beta-glucosidase, TmGH1. The pH dependence of enzyme activity and inhibition has been determined, structures of inhibitor complexes have been solved by X-ray crystallography, with data up to 1.65 A resolution, and isothermal titration calorimetry was used to establish the thermodynamic signature. This has allowed the characterization of 18 compounds, all putative transition-state mimics, in order to build an 'inhibition profile' that provides an insight into what governs binding. In contrast to our preconceptions, there is little correlation of inhibitor chemistry with the calorimetric dissection of thermodynamics. The ensemble of inhibitors shows strong enthalpy-entropy compensation, and the random distribution of similar inhibitors across the plot of DeltaH degrees a vs TDeltaS degrees a likely reflects the enormous contribution of solvation and desolvation effects on ligand binding.

Glycosidase inhibition: an assessment of the binding of 18 putative transition-state mimics., Gloster TM, Meloncelli P, Stick RV, Zechel D, Vasella A, Davies GJ, J Am Chem Soc. 2007 Feb 28;129(8):2345-54. Epub 2007 Feb 6. PMID:17279749

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

About this Structure

2j79 is a 2 chain structure with sequence from Thermotoga maritima. Full crystallographic information is available from OCA.

See Also

Reference

  • Gloster TM, Meloncelli P, Stick RV, Zechel D, Vasella A, Davies GJ. Glycosidase inhibition: an assessment of the binding of 18 putative transition-state mimics. J Am Chem Soc. 2007 Feb 28;129(8):2345-54. Epub 2007 Feb 6. PMID:17279749 doi:http://dx.doi.org/10.1021/ja066961g

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools