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1nkw

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1nkw, resolution 3.10Å ()

Related:

1njm, 1njn, 1njo, 1njp, 1k01, 1jzx, 1jzy, 1jzz, 1k00

Structural annotation:

Resources:

InterPro : Ipr001705, Ipr000271, Ipr001706, Ipr000473, Ipr012340, Ipr002171, Ipr005880, Ipr008991, Ipr014722, Ipr009000, Ipr000597, Ipr015498, Ipr002136, Ipr013005, Ipr002132, Ipr000702, Ipr002358, Ipr000244, Ipr009027, Ipr006519, Ipr000911, Ipr005822, Ipr005823, Ipr005745, Ipr000218, Ipr005749, Ipr001196, Ipr000114, Ipr000456, Ipr004389, Ipr005484, Ipr001857, Ipr005812, Ipr005813, Ipr001787, Ipr005727, Ipr001063, Ipr013025, Ipr001014, Ipr012678, Ipr012677, Ipr005825, Ipr005824, Ipr003256, Ipr014723, Ipr011035, Ipr001021, Ipr001684, Ipr001854, Ipr000517, Ipr005996, Ipr002150, Ipr002677
Pfam : PF00471, PF00468, PF01632, PF00444, PF00181, PF03947, PF00297, PF00573, PF00281, PF00673, PF00347, PF03948, PF01281, PF03946, PF00298, PF00572, PF00238, PF01305, PF00256, PF00252, PF01196, PF00861, PF01245, PF00453, PF00829, PF00237, PF00276, PF00467, PF01386, PF01016, PF00831, PF00327, PF01197, PF01783
SCOP : d1nkw0_, d1nkw9_, d1nkwb_, d1nkwd_, d1nkwf_, d1nkwh_, d1nkwq_, d1nkwp_, d1nkwo_, d1nkwn_, d1nkwm_, d1nkwl_, d1nkwk_, d1nkwj_, d1nkwi_, d1nkw1_, d1nkwz_, d1nkwy_, d1nkwx_, d1nkww_, d1nkwu_, d1nkwt_, d1nkws_, d1nkwr_, d1nkw4_, d1nkw3_, d1nkw2_, d1nkwg_, d1nkwe_, d1nkwc_, d1nkwa_
UniProt : Q9RSS4, Q9RSH2, Q9RSW6, Q9RSK0, Q9RXJ9, Q9RXK2, Q9RXK1, Q9RXJ0, Q9RSL3, Q9RY49, Q9RSS7, Q9RXY1, Q9RXJ2, Q9RSK9, Q9RXJ5, Q9RSJ5, Q9RSL2, Q9RWB4, Q9RSW7, Q9RY64, Q9RXJ7, Q9RXK0, Q9RXJ1, Q9RX88, Q9RY65, Q9RXJ4, Q9RSL0, Q9RW44, P49228

Functional annotation:
Cellular component:	ribonucleoprotein complex ribosome intracellular large ribosomal subunit
Biological process:	translation ribosomal large subunit assembly and maintenance
Molecular function:	RNA binding rRNA binding tRNA binding structural constituent of ribosome metal ion binding zinc ion binding transferase activity nucleotide binding 5S rRNA binding

Evolutionary conservation:

Toggle Conservation Colors:

Rows = identical sequences:

Further Information:

Caveats,

Explanation,
Complete Results at ConSurfDB

Resources:

FirstGlance, OCA, PDBsum, RCSB

Coordinates:

save as pdb, mmCIF, xml

1 Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans
2 About this Structure
3 See Also
4 Reference

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Publication Abstract from PubMed

We describe the high resolution structure of the large ribosomal subunit from Deinococcus radiodurans (D50S), a gram-positive mesophile suitable for binding of antibiotics and functionally relevant ligands. The over-all structure of D50S is similar to that from the archae bacterium Haloarcula marismortui (H50S); however, a detailed comparison revealed significant differences, for example, in the orientation of nucleotides in peptidyl transferase center and in the structures of many ribosomal proteins. Analysis of ribosomal features involved in dynamic aspects of protein biosynthesis that are partially or fully disordered in H50S revealed the conformations of intersubunit bridges in unbound subunits, suggesting how they may change upon subunit association and how movements of the L1-stalk may facilitate the exit of tRNA.

High resolution structure of the large ribosomal subunit from a mesophilic eubacterium., Harms J, Schluenzen F, Zarivach R, Bashan A, Gat S, Agmon I, Bartels H, Franceschi F, Yonath A, Cell. 2001 Nov 30;107(5):679-88. PMID:11733066

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

About this Structure

1nkw is a 30 chain structure of Ribosomal protein L2, Ribosomal protein L3, Ribosomal protein L4, Ribosomal protein L5, Ribosomal protein L6, Ribosomal protein L9 and Ribosome with sequence from Deinococcus radiodurans. This structure supersedes the now removed PDB entries and 1kc9. Full crystallographic information is available from OCA.

Reference

Harms J, Schluenzen F, Zarivach R, Bashan A, Gat S, Agmon I, Bartels H, Franceschi F, Yonath A. High resolution structure of the large ribosomal subunit from a mesophilic eubacterium. Cell. 2001 Nov 30;107(5):679-88. PMID:11733066

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1nkw

From Proteopedia

Contents

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

About this Structure

See Also

Reference

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