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1irx
From Proteopedia
| 1irx, resolution 2.60Å () | |||||
|---|---|---|---|---|---|
| Ligands: | |||||
| Activity: | Lysine--tRNA ligase, with EC number 6.1.1.6 | ||||
| Domains: | LysRS_core_class_I, LysS | ||||
| |||||
| Resources: | FirstGlance, OCA, PDBsum, RCSB, TOPSAN | ||||
| Coordinates: | save as pdb, mmCIF, xml | ||||
Crystal structure of class I lysyl-tRNA synthetase
Lysyl-tRNA can be synthesized by both a class I (LysRS-I) and a class II (LysRS-II) lysyl-tRNA synthetase. The crystal structure of LysRS-I from Pyrococcus horikoshii at 2.6 A resolution reveals extensive similarity with glutamyl-tRNA synthetase (GluRS). A comparison of the structures of LysRS-I and LysRS-II in complex with lysine shows that both enzymes use similar strategies for substrate recognition within unrelated active site topologies. A docking model based upon the GluRS-tRNA complex suggests how LysRS-I and LysRS-II can recognize the same molecular determinants in tRNALys, as shown by biochemical results, while approaching the acceptor helix of the tRNA from opposite sides.
Functional convergence of two lysyl-tRNA synthetases with unrelated topologies., Terada T, Nureki O, Ishitani R, Ambrogelly A, Ibba M, Soll D, Yokoyama S, Nat Struct Biol. 2002 Apr;9(4):257-62. PMID:11887185
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
About this Structure
1IRX is a 2 chains structure of sequences from Pyrococcus horikoshii. Full crystallographic information is available from OCA.
Reference
Functional convergence of two lysyl-tRNA synthetases with unrelated topologies., Terada T, Nureki O, Ishitani R, Ambrogelly A, Ibba M, Soll D, Yokoyama S, Nat Struct Biol. 2002 Apr;9(4):257-62. PMID:11887185
Page seeded by OCA on Sun Nov 16 15:43:01 2008
Categories: Lysine--tRNA ligase | Pyrococcus horikoshii | Ambrogelly, A. | Ibba, M. | Ishitani, R. | Nureki, O. | RSGI, RIKEN Structural Genomics/Proteomics Initiative. | Soll, D. | Terada, T. | Yokoyama, S. | Alpha-helix cage | Beta sandwitch | Riken structural genomics/proteomics initiative | Rossmann fold | Rsgi | Structural genomic | Zinc-binding structure
