1f8c

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1f8c, resolution 1.70Å ()
Ligands: , , ,
Activity: Exo-alpha-sialidase, with EC number 3.2.1.18
Related: 7nn9
Resources: FirstGlance, OCA, PDBsum, RCSB
Coordinates: save as pdb, mmCIF, xml



Contents

Native Influenza Neuraminidase in Complex with 4-amino-2-deoxy-2,3-dehydro-N-neuraminic Acid

Publication Abstract from PubMed

2,3-didehydro-2-deoxy-N:-acetylneuraminic acid (DANA) is a transition state analog inhibitor of influenza virus neuraminidase (NA). Replacement of the hydroxyl at the C9 position in DANA and 4-amino-DANA with an amine group, with the intention of taking advantage of an increased electrostatic interaction with a conserved acidic group in the active site to improve inhibitor binding, significantly reduces the inhibitor activity of both compounds. The three-dimensional X-ray structure of the complexes of these ligands and NA was obtained to 1.4 A resolution and showed that both ligands bind isosterically to DANA. Analysis of the geometry of the ammonium at the C4 position indicates that Glu119 may be neutral when these ligands bind. A computational analysis of the binding energies indicates that the substitution is successful in increasing the energy of interaction; however, the gains that are made are not sufficient to overcome the energy that is required to desolvate that part of the ligand that comes in contact with the protein.

Analysis of inhibitor binding in influenza virus neuraminidase., Smith BJ, Colman PM, Von Itzstein M, Danylec B, Varghese JN, Protein Sci. 2001 Apr;10(4):689-96. PMID:11274459

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

About this Structure

1f8c is a 1 chain structure with sequence from Viruses. Full crystallographic information is available from OCA.

See Also

Reference

  • Smith BJ, Colman PM, Von Itzstein M, Danylec B, Varghese JN. Analysis of inhibitor binding in influenza virus neuraminidase. Protein Sci. 2001 Apr;10(4):689-96. PMID:11274459

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