/*
* Copyright (C) 2006 Nicolas Vervelle, The Jmol Development Team
*
* Contact: nico@jmol.org, jmol-developers@lists.sf.net
*
* This library is free software; you can redistribute it and/or
* modify it under the terms of the GNU Lesser General Public
* License as published by the Free Software Foundation; either
* version 2.1 of the License, or (at your option) any later version.
*
* This library is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
* Lesser General Public License for more details.
*
* You should have received a copy of the GNU Lesser General Public
* License along with this library; if not, write to the Free Software
* Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA.
*/
/* Jaime Prilusky 2008 -- moved to Proteopedia/Support.js */
// function newAppletWindow(id) {
// var sm = "" +Math.random();
// sm = sm.substring(2,10);
// var url = "/wiki/extensions/Jmol/JmolPopup.html";
// if (id != undefined) { url = url + "?id=" + id + "&";}
// var name = "jmol_" + sm;
// var options = "menubar=yes,resizable=1,scrollbars,alwaysRaised,width=600,height=600,left=50";
// var newwindow = window.open(url,name,options);
// if (window.focus) {newwindow.focus()}
// return false;
// }
function jmolWikiPopupWindow(extensionPath, windowTitle, windowSize, windowLeft, windowTop, windowCode) {
var windowWidth = parseInt(windowSize) + 15;
var windowHeight = parseInt(windowSize) + 15;
var opt = "width=" + windowWidth + "," +
"height=" + windowHeight + "," +
"toolbar=0,location=0,directories=0,status=0,menubar=0,scrollbars=0,resizable=1," +
"left=" + windowLeft + ",top=" + windowTop ;
var s =
"\n" +
"\n" +
"" + windowTitle + "\n" +
"" +
"\n" +
"";
var w = open("", windowTitle, opt);
w.document.open();
w.document.write(s);
w.document.close();
w.focus();
}
/* Eran Hodis Feb 2009 -- moved to Proteopedia/Support.js */
/* function for Consurf chain buttons in Structure Box */
// function ConsurfChainButton(elementClicked) {
// // get the suffix of the Jmol applet on which we want to act by checking the target suffix added onto a child Jmol button's id
// //var targetSuffix = String(elementClicked);
// var strStart = elementClicked.lastIndexOf("_");
// var targetSuffix = elementClicked.slice(strStart + 1);
// var chainLetter = elementClicked.slice(0,strStart);
// strStart = chainLetter.lastIndexOf("_");
// chainLetter = chainLetter.slice(strStart + 1);
// var PDBid = elementClicked.slice(0,strStart);
// strStart = PDBid.lastIndexOf("_");
// PDBid = PDBid.slice(strStart + 1);
// var displayOn = chainLetter + ' [x]';
// var displayOff = chainLetter + ' [ ]';
// if (document.getElementById(elementClicked).value==displayOn) {
// document.getElementById(elementClicked).value=displayOff;
// } else {
// document.getElementById(elementClicked).value=displayOn;
// }
//
// var jmolScriptLoadPDB = "if (loadedfileprev != \""+PDBid.toUpperCase()+"\"); set refreshing false; load /cgi-bin/getpdbz?"+PDBid+"; loadedfileprev = \""+PDBid.toUpperCase()+"\"; reloadfile=true; endif;";
// var jmolScriptColorConsurf = "select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script \"/wiki/ConSurf/" + PDBid.slice(1,3) + "/" + PDBid + "_consurf.spt\"; set refreshing true;";
//
// // make sure the right PDB file is loaded
// jmolScript(jmolScriptLoadPDB,targetSuffix);
// // make sure the right coloring and representations are used
// jmolScript(jmolScriptColorConsurf,targetSuffix);
//
// // set the chains to match their displayed status on their Consurf buttons
// var Buttons = document.getElementById(elementClicked).parentNode.parentNode.parentNode.getElementsByTagName("input");
// for (var i = 0; i < Buttons.length; i++) {
// strStart = Buttons[i].value.lastIndexOf(" [");
// chainLetter = Buttons[i].value.slice(0,strStart);
// if (Buttons[i].value.lastIndexOf("[x]") == -1) {
// jmolScriptSetChain = "select :"+chainLetter+" and protein; spacefill off;color translucent -1; consurf_"+chainLetter+" = 1;"
// jmolScript(jmolScriptSetChain,targetSuffix);
// } else {
// jmolScriptSetChain = "select :"+chainLetter+" and protein; spacefill on; color opaque;consurf_"+chainLetter+" = 0;";
// jmolScript(jmolScriptSetChain,targetSuffix);
// }
// }
// }
function setupCheckboxShiftClick() {
return;
// Solution by Angel Herraez to resume checkbox functionality
// JP 2009
}